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Science & Nature * Technique based on artificial intelligence permits automation of crop seed analysis

Publicado em 19 março 2021

Por Janaína Simões | Agência FAPESP

In Brazil, researchers affiliated with the Center for Nuclear Energy in Agriculture (CENA) and the Luiz de Queiroz College of Agriculture (ESALQ), both part of the University of São Paulo (USP), have developed a methodology based on artificial intelligence to automate and streamline seed quality analysis, a process required by law and currently done manually by analysts accredited with the Ministry of Agriculture.

The group used light-based technology like that deployed in plant and cosmetics analysis to acquire images of the seeds. They then turned to machine learning to automate the image interpretation process, minimizing some of the difficulties of conventional methods. For example, for many species, optical imaging technology can be applied to an entire batch of seeds rather than just samples, as is the case currently. Furthermore, the technique is non-invasive and does not destroy the products analyzed or generate residues.

The light-based techniques consisted of chlorophyll fluorescence and multispectral imaging. Among plants that are relevant as both crops and experimental models, the researchers chose tomatoes and carrots produced in different countries and seasons and submitted to different storage conditions. They used seeds of the Gaucho and Tyna commercial tomato varieties produced in Brazil and the US, and seeds of the Brasilia and Francine carrot varieties produced in Brazil, Italy, and Chile.

The choice was based on the economic importance of these food crops, for which world demand is high and rising, and on the difficulties faced by growers in collecting their seeds. In both tomatoes and carrots, the ripening process is not uniform because the plants flower continuously and seed production is non-synchronous, so that seed lots may contain a mixture of immature and mature seeds. The presence of immature seeds is not easily detected by visual methods, and techniques based on machine vision can minimize this problem.

The researchers compared the results of their non-destructive analysis with those of traditional germination and vigor tests, which are destructive, time-consuming, and labor-intensive. In the germination test, seed analysts separate samples, sow them to germinate in favorable temperature, water, and oxygen conditions, and verify the final quantity of normal seedlings produced in accordance with the rules established by the Ministry of Agriculture. Vigor tests are complementary and more sophisticated. The most common are based on the seed’s response to stress and seedling growth parameters.

Besides the difficulties mentioned, traditional methods are time-consuming. In the case of tomatoes and carrots, for example, it can take up to two weeks to obtain results, which are also largely subjective, depending on the analyst’s interpretation. “Our proposal is to automate the process as much as possible using chlorophyll fluorescence and multispectral imaging to analyze seed quality. This will avoid all the usual bottlenecks,” said Clíssia Barboza da Silva, a researcher at CENA-USP and one of the authors of an article on the study published in Frontiers in Plant Science.

Silva is the principal investigator for the project supported by São Paulo Research Foundation – FAPESP. The lead author of the article is Patrícia Galletti, who conducted the study as part of her master’s research and won the Best Poster Award in 2019 at the 7th Seed Congress of the Americas, where she presented partial results of the project.

Chlorophyll as a marker of quality

Chlorophyll is present in seeds, where it supplies energy for the storage of nutrients needed for development (lipids, proteins, and carbohydrates). Once it has fulfilled this function, the chlorophyll breaks down. “However, if the seed doesn’t complete the maturation process, this chlorophyll remains inside it. The less residual chlorophyll, the more advanced the maturation process and the more and higher-quality the nutrients in the seed. If there’s a lot of chlorophyll, the seed is immature and its quality is poor,” Silva said.

If light at a specific wavelength is shone on the chlorophyll in a seed, it does not transfer this energy to another molecule but instead re-emits the light at another wavelength, meaning that it fluoresces. This fluorescence can be measured, she explained. Red light can be used to excite chlorophyll and capture the fluorescence using a device that converts it into an electrical signal, producing an image comprising gray, black, and w