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Amphibian fungal panzootic causes catastrophic and ongoing loss of biodiversity

Publicado em 28 março 2019

Por Scheele, B. C., Pasmans, F., Skerratt, L. F., Berger, L., Martel, A., Beukema, W., Acevedo, A. A., Burrowes, P. A., Carvalho, T., Catenazzi, A., De la Riva, I., Fisher, M. C., Flechas, S. V.

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The demise of amphibians?

Rapid spread of disease is a hazard in our interconnected world. The chytrid fungus Batrachochytrium dendrobatidis was identified in amphibian populations about 20 years ago and has caused death and species extinction at a global scale. Scheele et al. found that the fungus has caused declines in amphibian populations everywhere except at its origin in Asia (see the Perspective by Greenberg and Palen). A majority of species and populations are still experiencing decline, but there is evidence of limited recovery in some species. The analysis also suggests some conditions that predict resilience.

Science, this issue p. 1459; see also p. 1386

Abstract

Anthropogenic trade and development have broken down dispersal barriers, facilitating the spread of diseases that threaten Earth’s biodiversity. We present a global, quantitative assessment of the amphibian chytridiomycosis panzootic, one of the most impactful examples of disease spread, and demonstrate its role in the decline of at least 501 amphibian species over the past half-century, including 90 presumed extinctions. The effects of chytridiomycosis have been greatest in large-bodied, range-restricted anurans in wet climates in the Americas and Australia. Declines peaked in the 1980s, and only 12% of declined species show signs of recovery, whereas 39% are experiencing ongoing decline. There is risk of further chytridiomycosis outbreaks in new areas. The chytridiomycosis panzootic represents the greatest recorded loss of biodiversity attributable to a disease.

Highly virulent wildlife diseases are contributing to Earth’s sixth mass extinction (1). One of these is chytridiomycosis, which has caused mass amphibian die-offs worldwide (2, 3). Chytridiomycosis is caused by two fungal species, Batrachochytrium dendrobatidis [discovered in 1998, (4)] and B. salamandrivorans [discovered in 2013, (5)]. Both Batrachochytrium species likely originated in Asia, and their recent spread has been facilitated by humans (5, 6). Twenty years after the discovery of chytridiomycosis, substantial research has yielded insights about its epidemiology (2, 3, 7, 8), yet major knowledge gaps remain. First, the global extent of species declines associated with chytridiomycosis is unknown [see (2, 9) for initial assessments]. Second, although some regional declines are well studied, global spatial and temporal patterns of chytridiomycosis impacts remain poorly quantified. Third, ecological and life history traits have been examined only for a portion of declined species (10, 11). Finally, after initial declines, it is unknown what proportion of declined species exhibit recovery, stabilize at lower abundance, or continue to decline. Here we present a global epidemiological analysis of the spatial and temporal extent of amphibian biodiversity loss caused by chytridiomycosis.

We conducted a comprehensive examination of evidence from multiple sources, including the International Union for Conservation of Nature (IUCN) Red List of Threatened Species (12), peer-reviewed literature, and consultation with amphibian experts worldwide (data S1). We classified declined species into five decline-severity categories corresponding to reductions in abundance. Species declines were attributed to chytridiomycosis on the basis of diagnosis of infection causing mortalities in the wild or, if this was unavailable, evidence consistent with key epidemiological characteristics of this disease. Most evidence is retrospective because many species declined before the discovery of chytridiomycosis (data S1).

We conservatively report that chytridiomycosis has contributed to the decline of at least 501 amphibian species (6.5% of described amphibian species; Figs. 1 and 2). This represents the greatest documented loss of biodiversity attributable to a pathogen and places B. dendrobatidis among the most destructive invasive species, comparable to rodents (threatening 420 species) and cats (Felis catus) (threatening 430 species) (13). Losses associated with chytridiomycosis are orders of magnitude greater than for other high-profile wildlife pathogens, such as white-nose syndrome (Pseudogymnoascus destructans) in bats (six species) (14) or West Nile virus (Flavivirus sp.) in birds (23 species) (15). Of the 501 declined amphibian species, 90 (18%) are confirmed or presumed extinct in the wild, with a further 124 (25%) experiencing a >90% reduction in abundance (Figs. 1 and 2). The declines of all species except one (Salamandra salamandra affected by B. salamandrivorans) were attributed to B. dendrobatidis.

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Fig. 1 Global distribution of chytridiomycosis-associated amphibian species declines.

Bar plots indicate the number (N) of declined species, grouped by continental area and classified by decline severity. Brazilian species are plotted separately from all other South American species (South America W); Mesoamerica includes Central America, Mexico, and the Caribbean Islands; and Oceania includes Australia and New Zealand. No declines have been reported in Asia. n, total number of declines by region. [Photo credits (clockwise from top left): Anaxyrus boreas, C. Brown, U.S. Geological Survey; Atelopus varius, B.G.; Salamandra salamandra, D. Descouens, Wikimedia Commons; Telmatobius sanborni, I.D.l.R; Cycloramphus boraceiensis, L.F.T.; Cardioglossa melanogaster, M.H.; and Pseudophryne corroboree, C. Doughty]

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Fig. 2 Taxonomic distribution of chytridiomycosis-associated amphibian declines.

Each bar represents one species, and color denotes the severity of its decline. Concentric circles indicate, from inner to outer, order (Caudata or Anura), family, and genus. Full names are given only for families and genera that include >5 and >2 species, respectively; details for all taxa are in table S4. Within each taxonomic level, sublevels are ordered alphabetically. Protruding bars indicate species for which there is evidence of recovery. [Photo credits (left to right): Telmatobius bolivianus, I.D.l.R.; Atelopus zeteki, B.G.; and Craugastor crassidigitus, B.G.]

Declines were proportional to taxonomic abundance, with anurans having 93% of severe declines (they comprise 89% of all amphibian species). Within anurans, there has been marked taxonomic clustering of declines, with 45% of severe declines and extinctions occurring in the Neotropical genera Atelopus, Craugastor, and Telmatobius (Fig. 2) (16). Chytridiomycosis is lethal to caecilians (17), but there have been no caecilian declines due to the disease, although data are limited. The capacity for B. dendrobatidis to cause major declines is attributable to its maintenance of high pathogenicity (2, 18), broad host range (8), high transmission rate within and among host species (2, 7), and persistence in reservoir host species and the environment (19). For many species, chytridiomycosis is the principal driver of decline, exemplified by precipitous mass mortalities in undisturbed environments (2). In other species, chytridiomycosis acts in concert with habitat loss, altered climatic conditions, and invasive species to exacerbate species declines (20).

Most amphibian declines have occurred in the tropics of Australia, Mesoamerica, and South America (Fig. 1), supporting the hypothesis that B. dendrobatidis spread from Asia into the New World (6). Asia, Africa, Europe, and North America have had notably low numbers of declines attributable to chytridiomycosis, despite widespread occurrence of B. dendrobatidis (8). Relative lack of documented declines could reflect less knowledge of amphibian populations in Asia and Africa (3, 21), early introduction and potential coevolution of amphibians and B. dendrobatidis in parts of Africa and the Americas [e.g., (22)], the comparatively recent emergence of B. dendrobatidis in Western and Northeast Africa (6), or unsuitable conditions for chytridiomycosis. It remains unknown whether chytridiomycosis contributed to widespread amphibian declines reported in North America and Europe in the 1950s to 1960s (3, 21, 22) or current enigmatic salamander declines in eastern North America. Although the number of new declines has now eased (Fig. 3), additional declines could occur if B. dendrobatidis or B. salamandrivorans are introduced into new areas, highly virulent lineages are introduced into areas that currently have less-virulent lineages (6), and/or environmental changes alter previously stable pathogen-host dynamics (3).

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Fig. 3 Timing of chytridiomycosis-associated amphibian declines.

(A) Declines by year. Bars indicate the number of declines in a given year, stacked by decline severity. For species for which the exact year of decline is uncertain, the figure shows the middle year of the interval of uncertainty, as stated by experts or inferred from available data. (B) Cumulative declines. Curves indicate the cumulative number of declines in each decline-severity category over time. In (A) and (B), the arrows mark the discovery of chytridiomycosis in 1998.

Chytridiomycosis-associated declines peaked globally in the 1980s, between one and two decades before the discovery of the disease (Fig. 3 and table S1), and coincident with anecdotal recognition of amphibian declines in the 1990s (23). A second, smaller peak occurred in the early 2000s, associated with an increase in declines in western South America (Fig. 3 and fig. S1). Regionally, temporal patterns of decline are variable (fig. S1). For example, in some areas of South America and Australia, declines commenced in the late 1970s (2, 24), whereas in other areas, declines started in the 2000s (25). B. dendrobatidis is associated with ongoing declines in 197 assessed species. Ongoing declines after a transition to enzootic disease dynamics (19) might be driven by a lack of effective host defenses, maintenance of high pathogenicity (18), and presence of B. dendrobatidis in amphibian and nonamphibian reservoirs (7, 19).

We examined host life history traits and environmental conditions to understand why some species declined more severely than others, using multinomial logistic regression and accounting for the degree of evidence that chytridiomycosis was implicated in each species’s decline (fig. S2 and table S2). Decline severity was greatest for larger-bodied species, those occurring in consistently wet regions, and those strongly associated with perennial aquatic habitats. These patterns are likely due to favorable environmental conditions for B. dendrobatidis in wet regions (7), because the fungus dies when desiccated, as well as the general pattern of increased time to maturity in large-bodied amphibians resulting in less reproductive potential to offset mortality due to chytridiomycosis (26). Declines were less severe for species with large geographic and elevational ranges (Fig. 4), potentially owing to the greater chance of their range encompassing environmental conditions unfavorable for B. dendrobatidis (3) and/or information bias, because population extinctions can be assessed with more certainty in restricted-range species. Our results are consistent with previous studies that show that the risk of chytridiomycosis is associated with host aquatic habitat use, large body size, and narrow elevational range (10, 11).

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Fig. 4 Severity of chytridiomycosis-associated amphibian declines in relation to the geographic and elevational ranges of species.

(A) Declines in relation to geographic range. Each dot indicates a species, located randomly along the perimeter of a circle with radius equal to the log10 of the species’s geographic range in kilometers squared. (B) Declines in relation to elevational range. Horizontal bars, boxes, and vertical bars indicate, respectively, mean, first and second quartiles, and 95% quantiles of elevation ranges within each category of decline severity.

Encouragingly, of the 292 surviving species for which population trends are known, 60 (20%) have shown initial signs of recovery. However, recoveries generally represent small increases in abundance of individual populations, not complete recovery at the species level. Logistic regression showed the probability of recovery was lower for species that experienced more recent or more severe declines, for large-bodied or nocturnal species, and for species occurring at higher elevations (fig. S2 and table S3). When holding those predictors of recovery at their mean value, the chance of a species recovering from a severe (>90%) decline was less than 1 in 10. Low probability of recovery for high-elevation species might be related to suitable climatic conditions for fungal persistence as well as limited connectivity to source populations and/or longer host generation time (26). Some recoveries may be underpinned by selection for increased host resistance (18), whereas management of concurrent threats may have facilitated other recoveries (a promising avenue for conservation interventions) (27). Unfortunately, the remaining 232 species have shown no signs of recovery.

The unprecedented lethality of a single disease affecting an entire vertebrate class highlights the threat from the spread of pathogens in a globalized world. Global trade has recreated a functional Pangaea for infectious diseases in wildlife, with far-reaching impacts on biodiversity (this study), livestock (28), and human health (29). Effective biosecurity and an immediate reduction in wildlife trade are urgently needed to reduce the risk of pathogen spread. As mitigation of chytridiomycosis in nature remains unproven (30), new research and intensive monitoring that utilizes emerging technologies are needed to identify mechanisms of species recovery and develop new mitigation actions for declining species.

Supplementary Materials

www.sciencemag.org/content/363/6434/1459/suppl/DC1

Materials and Methods

Figs. S1 and S2

Tables S1 to S4

References (31–47)

Data S1

http://www.sciencemag.org/about/science-licenses-journal-article-reuse

This is an article distributed under the terms of the Science Journals Default License.

References and Notes ?

M. C. Fisher, D. A. Henk, C. J. Briggs, J. S. Brownstein, L. C. Madoff, S. L. McCraw, S. J. Gurr , Emerging fungal threats to animal, plant and ecosystem health. Nature 484, 186–194 (2012). doi:10.1038/nature10947pmid:22498624

OpenUrl CrossRef PubMed Web of Science

?

L. F. Skerratt, L. Berger, R. Speare, S. Cashins, K. R. McDonald, A. D. Phillott, H. B. Hines, N. Kenyon , Spread of chytridiomycosis has caused the rapid global decline and extinction of frogs. EcoHealth 4, 125–134 (2007). doi:10.1007/s10393-007-0093-5

OpenUrl CrossRef Web of Science

?

K. R. Lips , Overview of chytrid emergence and impacts on amphibians. Philos. Trans. R. Soc. Lond. B Biol. Sci. 371, 20150465 (2016). doi:10.1098/rstb.2015.0465pmid:28080989

OpenUrl CrossRef PubMed

?

L. Berger, R. Speare, P. Daszak, D. E. Green, A. A. Cunningham, C. L. Goggin, R. Slocombe, M. A. Ragan, A. D. Hyatt, K. R. McDonald, H. B. Hines, K. R. Lips, G. Marantelli, H. Parkes , Chytridiomycosis causes amphibian mortality associated with population declines in the rain forests of Australia and Central America. Proc. Natl. Acad. Sci. U.S.A. 95, 9031–9036 (1998). doi:10.1073/pnas.95.15.9031pmid:9671799

OpenUrl Abstract/FREE Full Text

?

A. Martel, M. Blooi, C. Adriaensen, P. Van Rooij, W. Beukema, M. C. Fisher, R. A. Farrer, B. R. Schmidt, U. Tobler, K. Goka, K. R. Lips, C. Muletz, K. R. Zamudio, J. Bosch, S. Lötters, E. Wombwell, T. W. J. Garner, A. A. Cunningham, A. Spitzen-van der Sluijs, S. Salvidio, R. Ducatelle, K. Nishikawa, T. T. Nguyen, J. E. Kolby, I. Van Bocxlaer, F. Bossuyt, F. Pasmans , Recent introduction of a chytrid fungus endangers Western Palearctic salamanders. Science 346, 630–631 (2014). doi:10.1126/science.1258268pmid:25359973

OpenUrl Abstract/FREE Full Text

?

S. J. O’Hanlon, A. Rieux, R. A. Farrer, G. M. Rosa, B. Waldman, A. Bataille, T. A. Kosch, K. A. Murray, B. Brankovics, M. Fumagalli, M. D. Martin, N. Wales, M. Alvarado-Rybak, K. A. Bates, L. Berger, S. Böll, L. Brookes, F. Clare, E. A. Courtois, A. A. Cunningham, T. M. Doherty-Bone, P. Ghosh, D. J. Gower, W. E. Hintz, J. Höglund, T. S. Jenkinson, C.-F. Lin, A. Laurila, A. Loyau, A. Martel, S. Meurling, C. Miaud, P. Minting, F. Pasmans, D. S. Schmeller, B. R. Schmidt, J. M. G. Shelton, L. F. Skerratt, F. Smith, C. Soto-Azat, M. Spagnoletti, G. Tessa, L. F. Toledo, A. Valenzuela-Sánchez, R. Verster, J. Vörös, R. J. Webb, C. Wierzbicki, E. Wombwell, K. R. Zamudio, D. M. Aanensen, T. Y. James, M. T. P. Gilbert, C. Weldon, J. Bosch, F. Balloux, T. W. J. Garner, M. C. Fisher , Recent Asian origin of chytrid fungi causing global amphibian declines. Science 360, 621–627 (2018). doi:10.1126/science.aar1965pmid:29748278

OpenUrl Abstract/FREE Full Text

?

T. Y. James, L. F. Toledo, D. Rödder, D. da Silva Leite, A. M. Belasen, C. M. Betancourt-Román, T. S. Jenkinson, C. Soto-Azat, C. Lambertini, A. V. Longo, J. Ruggeri, J. P. Collins, P. A. Burrowes, K. R. Lips, K. R. Zamudio, J. E. Longcore , Disentangling host, pathogen, and environmental determinants of a recently emerged wildlife disease: Lessons from the first 15 years of amphibian chytridiomycosis research. Ecol. Evol. 5, 4079–4097 (2015). doi:10.1002/ece3.1672pmid:26445660

OpenUrl CrossRef PubMed

?

D. H. Olson, D. M. Aanensen, K. L. Ronnenberg, C. I. Powell, S. F. Walker, J. Bielby, T. W. J. Garner, G. Weaver, M. C. Fisher; Bd Mapping Group , Mapping the global emergence of Batrachochytrium dendrobatidis, the amphibian chytrid fungus. PLOS ONE 8, e56802 (2013). doi:10.1371/journal.pone.0056802pmid:23463502

OpenUrl CrossRef PubMed

?

S. N. Stuart, J. S. Chanson, N. A. Cox, B. E. Young, A. S. L. Rodrigues, D. L. Fischman, R. W. Waller , Status and trends of amphibian declines and extinctions worldwide. Science 306, 1783–1786 (2004). doi:10.1126/science.1103538pmid:15486254

OpenUrl Abstract/FREE Full Text

?

J. Bielby, N. Cooper, A. A. Cunningham, T. W. J. Garner, A. Purvis , Predicting susceptibility to future declines in the world’s frogs. Conserv. Lett. 1, 82–90 (2008). doi:10.1111/j.1755-263X.2008.00015.x

OpenUrl CrossRef

?

K. R. Lips, J. D. Reeve, L. R. Witters , Ecological traits predicting amphibian population declines in Central America. Conserv. Biol. 17, 1078–1088 (2003). doi:10.1046/j.1523-1739.2003.01623.x

OpenUrl CrossRef Web of Science

?

The IUCN Red List of Threatened Species, Version 2017-3 (IUCN Species Survival Commission, Gland, Switzerland); www.iucnredlist.org.

?

T. S. Doherty, A. S. Glen, D. G. Nimmo, E. G. Ritchie, C. R. Dickman , Invasive predators and global biodiversity loss. Proc. Natl. Acad. Sci. U.S.A. 113, 11261–11265 (2016). doi:10.1073/pnas.1602480113pmid:27638204

OpenUrl Abstract/FREE Full Text

?

W. E. Thogmartin, C. A. Sanders-Reed, J. A. Szymanski, P. C. McKann, L. Pruitt, R. A. King, M. C. Runge, R. E. Russell , White-nose syndrome is likely to extirpate the endangered Indiana bat over large parts of its range. Biol. Conserv. 160, 162–172 (2013). doi:10.1016/j.biocon.2013.01.010

OpenUrl CrossRef

?

T. L. George, R. J. Harrigan, J. A. LaManna, D. F. DeSante, J. F. Saracco, T. B. Smith , Persistent impacts of West Nile virus on North American bird populations. Proc. Natl. Acad. Sci. U.S.A. 112, 14290–14294 (2015). doi:10.1073/pnas.1507747112pmid:26578774

OpenUrl Abstract/FREE Full Text

?

E. La Marca, K. R. Lips, S. Lotters, R. Puschendorf, R. Ibanez, J. V. Rueda-Almonacid, R. Schulte, C. Marty, F. Castro, J. Manzanilla-Puppo, J. E. Garcia-Perez, F. Bolanos, G. Chaves, J. A. Pounds, E. Toral, B. E. Young , Catastrophic population declines and extinctions in neotropical harlequin frogs (Bufonidae: Atelopus). Biotropica 37, 190–201 (2005). doi:10.1111/j.1744-7429.2005.00026.x

OpenUrl CrossRef Web of Science

?

D. J. Gower, T. Doherty-Bone, S. P. Loader, M. Wilkinson, M. T. Kouete, B. Tapley, F. Orton, O. Z. Daniel, F. Wynne, E. Flach, H. Müller, M. Menegon, I. Stephen, R. K. Browne, M. C. Fisher, A. A. Cunningham, T. W. J. Garner , Batrachochytrium dendrobatidis infection and lethal chytridiomycosis in caecilian amphibians (Gymnophiona). EcoHealth 10, 173–183 (2013). doi:10.1007/s10393-013-0831-9pmid:23677560

OpenUrl CrossRef PubMed

?

J. Voyles, D. C. Woodhams, V. Saenz, A. Q. Byrne, R. Perez, G. Rios-Sotelo, M. J. Ryan, M. C. Bletz, F. A. Sobell, S. McLetchie, L. Reinert, E. B. Rosenblum, L. A. Rollins-Smith, R. Ibáñez, J. M. Ray, E. J. Griffith, H. Ross, C. L. Richards-Zawacki , Shifts in disease dynamics in a tropical amphibian assemblage are not due to pathogen attenuation. Science 359, 1517–1519 (2018). doi:10.1126/science.aao4806pmid:29599242

OpenUrl Abstract/FREE Full Text

?

A. Valenzuela-Sánchez, B. R. Schmidt, D. E. Uribe-Rivera, F. Costas, A. A. Cunningham, C. Soto-Azat , Cryptic disease-induced mortality may cause host extinction in an apparently stable host-parasite system. Proc. Biol. Sci. 284, 20171176 (2017). doi:10.1098/rspb.2017.1176pmid:28954907

OpenUrl CrossRef PubMed

?

D. B. Wake, V. T. Vredenburg , Colloquium paper: Are we in the midst of the sixth mass extinction? A view from the world of amphibians. Proc. Natl. Acad. Sci. U.S.A. 105 (suppl. 1), 11466–11473 (2008). doi:10.1073/pnas.0801921105pmid:18695221

OpenUrl Abstract/FREE Full Text

?

J. E. Houlahan, C. S. Findlay, B. R. Schmidt, A. H. Meyer, S. L. Kuzmin , Quantitative evidence for global amphibian population declines. Nature 404, 752–755 (2000). doi:10.1038/35008052pmid:10783886

OpenUrl CrossRef PubMed Web of Science

?

B. L. Talley, C. R. Muletz, V. T. Vredenburg, R. C. Fleischer, K. R. Lips , A century of Batrachochytrium dendrobatidis in Illinois amphibians (1888–1989). Biol. Conserv. 182, 254–261 (2015). doi:10.1016/j.biocon.2014.12.007

OpenUrl CrossRef

?

D. B. Wake , Declining amphibian populations. Science 253, 860–860 (1991). doi:10.1126/science.253.5022.860pmid:17751819

OpenUrl FREE Full Text

?

K. R. Lips, J. Diffendorfer, J. R. Mendelson III, M. W. Sears , Riding the wave: Reconciling the roles of disease and climate change in amphibian declines. PLOS Biol. 6, e72 (2008). doi:10.1371/journal.pbio.0060072pmid:18366257

OpenUrl CrossRef PubMed

?

A. Catenazzi, E. Lehr, L. O. Rodriguez, V. T. Vredenburg , Batrachochytrium dendrobatidis and the collapse of anuran species richness and abundance in the Upper Manu National Park, Southeastern Peru. Conserv. Biol. 25, 382–391 (2011). pmid:21054530

OpenUrl PubMed Web of Science

?

C. Morrison, J. M. Hero , Geographic variation in life-history characteristics of amphibians: A review. J. Anim. Ecol. 72, 270–279 (2003). doi:10.1046/j.1365-2656.2003.00696.x

OpenUrl CrossRef

?

R. A. Knapp, G. M. Fellers, P. M. Kleeman, D. A. W. Miller, V. T. Vredenburg, E. B. Rosenblum, C. J. Briggs , Large-scale recovery of an endangered amphibian despite ongoing exposure to multiple stressors. Proc. Natl. Acad. Sci. U.S.A. 113, 11889–11894 (2016). doi:10.1073/pnas.1600983113pmid:27698128

OpenUrl Abstract/FREE Full Text

?

A. K. Wiethoelter, D. Beltrán-Alcrudo, R. Kock, S. M. Mor , Global trends in infectious diseases at the wildlife-livestock interface. Proc. Natl. Acad. Sci. U.S.A. 112, 9662–9667 (2015). doi:10.1073/pnas.1422741112pmid:26195733

OpenUrl Abstract/FREE Full Text

?

K. J. Olival, P. R. Hosseini, C. Zambrana-Torrelio, N. Ross, T. L. Bogich, P. Daszak , Host and viral traits predict zoonotic spillover from mammals. Nature 546, 646–650 (2017). doi:10.1038/nature22975pmid:28636590

OpenUrl CrossRef PubMed

?

T. W. Garner, B. R. Schmidt, A. Martel, F. Pasmans, E. Muths, A. A. Cunningham, C. Weldon, M. C. Fisher, J. Bosch , Mitigating amphibian chytridiomycoses in nature. Philos. Trans. R. Soc. Lond. B Biol. Sci. 371, 20160207 (2016). doi:10.1098/rstb.2016.0207pmid:28080996

OpenUrl CrossRef PubMed

?

J. E. Longcore, A. P. Pessier, D. K. Nichols , Batrochochytrium dendrobatidis gen. et sp. nov., a chytrid pathogenic to amphibians. Mycologia 91, 219–227 (1999). doi:10.2307/3761366

OpenUrl CrossRef Web of Science

B. C. Scheele, L. F. Skerratt, L. F. Grogan, D. A. Hunter, N. Clemann, M. McFadden, D. Newell, C. J. Hoskin, G. R. Gillespie, G. W. Heard, L. Brannelly, A. A. Roberts, L. Berger , After the epidemic: Ongoing declines, stabilizations and recoveries in amphibians afflicted by chytridiomycosis. Biol. Conserv. 206, 37–46 (2017). doi:10.1016/j.biocon.2016.12.010

OpenUrl CrossRef

I. Dohoo, S. Martin, H. Stryhn, Veterinary Epidemiologic Research (VER Inc., Charlottetown, Canada, ed. 2, 2009).

A. J. Crawford, K. R. Lips, E. Bermingham , Epidemic disease decimates amphibian abundance, species diversity, and evolutionary history in the highlands of central Panama. Proc. Natl. Acad. Sci. U.S.A. 107, 13777–13782 (2010). doi:10.1073/pnas.0914115107pmid:20643927

OpenUrl Abstract/FREE Full Text

The IUCN Red List of Threatened Species, Version 2016-1 (IUCN Species Survival Commission, Gland, Switzerland); www.iucnredlist.org.

A. Purvis, J. L. Gittleman, G. Cowlishaw, G. M. Mace , Predicting extinction risk in declining species. Proc. Biol. Sci. 267, 1947–1952 (2000). doi:10.1098/rspb.2000.1234pmid:11075706

OpenUrl CrossRef PubMed Web of Science

K. A. Murray, D. Rosauer, H. McCallum, L. F. Skerratt , Integrating species traits with extrinsic threats: Closing the gap between predicting and preventing species declines. Proc. Biol. Sci. 278, 1515–1523 (2011). doi:10.1098/rspb.2010.1872pmid:20980304

OpenUrl CrossRef PubMed

K. A. Murray, R. W. R. Retallick, R. Puschendorf, L. F. Skerratt, D. Rosauer, H. I. McCallum, L. Berger, R. Speare, J. VanDerWal , Assessing spatial patterns of disease risk to biodiversity: Implications for the management of the amphibian pathogen, Batrachochytrium dendrobatidis. J. Appl. Ecol. 48, 163–173 (2011). doi:10.1111/j.1365-2664.2010.01890.x

OpenUrl CrossRef Web of Science

R. Puschendorf, A. C. Carnaval, J. VanDerWal, H. Zumbado-Ulate, G. Chaves, F. Bolaños, R. A. Alford , Distribution models for the amphibian chytrid Batrachochytrium dendrobatidis in Costa Rica: Proposing climatic refuges as a conservation tool. Divers. Distrib. 15, 401–408 (2009). doi:10.1111/j.1472-4642.2008.00548.x

OpenUrl CrossRef Web of Science

M. Plummer, in Proceedings of the 3rd International Workshop on Distributed Statistical Computing (DSC 2003), K. Hornik, F. Leisch, Eds. (Vienna, Austria, 2003).

S. E. Fick, R. J. Hijmans , WorldClim 2: New 1-km spatial resolution climate surfaces for global land areas. Int. J. Climatol. 37, 4302–4315 (2017). doi:10.1002/joc.5086

OpenUrl CrossRef

B. F. Oliveira, V. A. São-Pedro, G. Santos-Barrera, C. Penone, G. C. Costa , AmphiBIO, a global database for amphibian ecological traits. Sci. Data 4, 170123 (2017). pmid:28872632

OpenUrl PubMed

K. M. Kriger, J. M. Hero , The chytrid fungus Batrachochytrium dendrobatidis is non-randomly distributed across amphibian breeding habitats. Divers. Distrib. 13, 781–788 (2007). doi:10.1111/j.1472-4642.2007.00394.x

OpenUrl CrossRef Web of Science

AmphibiaWeb (University of California, Berkeley, 2017); https://amphibiaweb.org/.

S. N. Stuart, M. Hoffmann, J. S. Chanson, N. A. Cox, R. J. Berridge, P. Ramani, B. E. Young, Threatened Amphibians of the World (Lynx Edicions, Barcelona, Spain; IUCN, Gland, Switzerland; Conservation International, Arlington, VA, 2008).

J. J. L. Rowley, R. A. Alford , Hot bodies protect amphibians against chytrid infection in nature. Sci. Rep. 3, 1515 (2013). doi:10.1038/srep01515pmid:23519020

OpenUrl CrossRef PubMed

?

C. L. Richards-Zawacki , Thermoregulatory behaviour affects prevalence of chytrid fungal infection in a wild population of Panamanian golden frogs. Proc. Biol. Sci. 277, 519–528 (2010). doi:10.1098/rspb.2009.1656pmid:19864287

OpenUrl CrossRef PubMed Web of Science

Acknowledgments: We thank M. Arellano, E. Courtois, A. Cunningham, K. Murray, S. Ron, R. Puschendorf, J. Rowley, and V. Vredenburg for discussions on amphibian declines. Comments from two anonymous reviewers greatly improved the manuscript. Funding: B.C.S. and D.B.L. were supported by the Australian National Environmental Science Program. L.B., L.F.S., T.A.K., and B.C.S. were supported by the Australian Research Council (grants FT100100375, LP110200240, and DP120100811), the NSW Office of Environment and Heritage, and the Taronga Conservation Science Initiative. S.C., W.B., A.M., and F.P. were supported by Research Foundation Flanders grants FWO3E001916 and FWO11ZK916N-11ZK918N and Ghent University grant BOF16/GOA/024. S.C. was supported by Research Foundation Flanders grant FWO16/PDO/019. A.A.A. was supported by the Conservation Leadership Program (0621310), Vicerrectoría de Investigaciones, Universidad de Pamplona-Colombia, and Colciencias (1121-659-44242). T.C. was supported by the Coordination for the Improvement of Higher Education Personnel. A.C. was supported by the Amazon Conservation Association, the Amphibian Specialist Group, the Disney Worldwide Conservation Fund, the Eppley Foundation, the Mohammed bin Zayed Species Conservation Fund, the NSF, the Rufford Small Grants Foundation, and the Swiss National Foundation. I.D.l.R. was supported by the Spanish Government (CGL2014-56160-P). M.C.F. was supported by the NERC (NE/K014455/1), the Leverhulme Trust (RPG-2014-273), and the Morris Animal Foundation (D16ZO-022). S.V.F. was supported by the USFWS Wildlife without Borders (96200-0-G228), the AZA–Conservation Endowment Fund (08-836), and the Conservation International Critically Endangered Species Fund. P.F.Á. was supported by a Postdoctoral Research fellowship from the Mexican Research Council (CONACYT, 171465). T.W.J.G. was supported by the NERC (NE/N009967/1 and NE/K012509/1). J.M.G. was supported by the Universidad San Francisco de Quito (collaboration grants 11164 and 5447). M.H. was supported by scholarships from the Elsa-Neumann-Foundation and the German Academic Exchange Service (DAAD). C.A.M. was supported by the Atkinson Center for a Sustainable Future and the Cornell Center for Vertebrate Genomics. G.P.-O. was supported by DGAPA-UNAM and CONACYT while on sabbatical at the University of Otago, New Zealand. C.L.R.-Z. was supported by the NSF (1660311). S.M.R. was supported by a CONACYT Problemas Nacionales grant (PDCPN 2015-721) and a UC Mexus-Conacy cooperative grant. C.S.-A. was supported by the Chilean National Science and Technology Fund (Fondecyt no. 1181758). L.F.T. was supported by the São Paulo Research Foundation (FAPESP 2016/25358-3) and the National Council for Scientific and Technological Development (CNPq 300896/2016-6). J.V. was supported by the NSF (DEB-1551488 and IOS-1603808). C.W. was supported by the South African National Research Foundation. Author contributions: B.C.S., F.P., L.B., L.F.S., A.M., and S.C. conceived the research. B.C.S. collated the data and coordinated data collection. All authors contributed ideas and data. S.C. conducted the analysis, with input from B.C.S., F.P., A.M., C.N.F., and W.B. B.C.S., F.P., L.B., L.F.S., A.M., C.N.F., and S.C. wrote the paper with input from all authors. Competing interests: The authors declare no competing interests. Data and materials availability: All data are available in the manuscript or the supplementary materials.

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